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Overview

ADF - The Amsterdam Density Functional (ADF) package is software for first-principles electronic structure calculations. ADF is used by academic and industrial researchers worldwide in such diverse fields as pharmacochemistry and materials science. It is particularly popular in the research areas of:

  • Homogeneous and heterogeneous catalysis
  • Inorganic chemistry
  • Heavy element chemistry
  • Various types of spectroscopy
  • Biochemistry

ADF is based on Density Functional Theory (DFT), which has dominated quantum chemistry applications since the early 1990s. DFT gives superior accuracy to Hartree-Fock theory and semi-empirical approaches. In contrast to conventional ab initio methods (MP2, CI, CC), it enables accurate treatment of systems with several hundreds of atoms (or several thousands with QM/MM).

ADF is being developed at the well-known theoretical chemistry groups of Prof. Baerends, Prof. Ziegler, Prof. Snijders, and by several other scientists worldwide. Scientific Computing & Modelling NV (SCM), a spin-off company from the Baerends group, coordinates the developments and supports the ADF user community.

ADF Program Modules:

Key Features

  • The ADF package can be applied to isolated molecules, polymers, slabs, solids, molecules in solvents, and molecules in protein environments.
  • It can treat all elements of the periodic table and contains state-of-the-art relativistic methods (ZORA and spin-orbit coupling) to treat heavy nuclei.
  • ADF is especially suited for applications to transition metal compounds.
  • It is efficient due to a combination of linear scaling and parallelization techniques.
  • ADF contains many standard methods for studying potential energy surfaces.
  • ADF can treat a wide range of molecular properties.
  • Chemically relevant analysis methods are available (including bond energy decomposition, fragment orbitals and charge decomposition).
  • The QM/MM implementation enables the treatment of protein environments with many thousands of atoms.
  • ADF includes the very latest meta-GGA exchange-correlation functionals as well as a full range of standard functionals.

Seascape Scientific Partner: SCM, Netherlands

The Molecular ADF Program

Geometry optimizations, transition states, and reaction paths

  • ADF enables geometry optimizations in Cartesian and internal coordinates.
  • An initial Hessian estimate speeds up the optimizations.
  • Various constraints can be imposed.
  • Transition state searches, intrinsic reaction coordinates, and linear transit calculations are available to further analyze the energy path from reactants via the transition state to the final products.
  • Finite difference and analytic second derivatives yield IR frequencies and Hessians. These Hessians are helpful in finding and characterizing transition states.

Molecular properties with ADF

  • The time-dependent DFT implementation yields UV/Vis spectra (singlet and triplet excitation energies, as well as oscillator strengths), frequency-dependent (hyper)polarizabilities (nonlinear optics), Raman intensities, and van der Waals dispersion coefficients.
  • Rotatory strengths and optical rotatory dispersion (optical properties of chiral molecules) are being implemented (contact us for the current status).
  • Frequency-dependent dielectric functions for periodic structures will soon become available (contact us for the current status).
  • NMR chemical shifts and spin-spin couplings are available.
  • ESR (EPR) g-tensors, magnetic and electric hyperfine tensors, and nuclear quadrupole coupling constants can be treated.
  • Standard properties like IR frequencies and intensities, and multipole moments are of course accessible.
  • Relativistic effects (ZORA and spin-orbit coupling) can be included for most properties.

Analysis

ADF contains several unique analysis options to help a gain detailed understanding of the chemical problem at hand. These methods highlight the underlying philosophy that the Kohn-Sham orbitals in DFT can be used for a "quantitative MO theory".

Molecule built from fragments

ADF and BAND analyze their results in terms of user-specified subsystems from which the total system is built. The program offers the "fragment orbitals" (FOs) of the chemically meaningful sub-units mix with FOs on other fragments to combine to the final molecular orbitals.

Bond energy analysis

ADF calculates various chemically meaningful terms that add up to the bond energy, with an adaptation of Morokuma's bond energy decomposition to the Kohn-Sham MO method. The individual terms are chemically intuitive quantities such as electrostatic energy, steric repulsion, Pauli repulsion, and orbital interactions. The latter are symmetry decomposed according to the Ziegler transition state method.

Advanced charge density analysis

In addition to Mulliken charge analysis, ADF calculates several atomic charges that do not share the flaws of Mulliken (strong basis set dependence). These charge analysis methods ("Voronoy deformation density" and "Hirshfeld") provide atomic charges that agree well with chemical intuition.

Molecular symmetry

ADF uses the full molecular symmetry including non-Abelian groups. The proper symmetry labels to orbitals, excitations, vibrational modes are provided on output.

Accuracy

ADF embodies a set of unique technical features that ensure reliable and accurate calculations.

Slater type basis sets

ADF uses Slater Type Orbitals (STOs) as basis functions. These resemble the true atomic orbitals more closely than the more common Gaussian Type Orbitals (GTOs). Therefore, fewer STOs than GTOs are needed for a certain level of accuracy. ADF has a database with thoroughly tested basis set files, ranging in quality from single-zeta to quadruple zeta basis sets with various diffuse and polarization functions. They are available for all elements, including lanthanides and actinides. In the BAND program, numerical atomic orbitals are used in addition to Slater type orbitals.

Integration scheme

ADF and BAND use the unique Te Velde-Baerends [6] numerical integration scheme, in which the grid is automatically adapted to the available basis functions and to the number of significant digits demanded by the user through a single input parameter. It is straightforward to do very accurate integrations with much fewer points than in less highly developed schemes.

Transition metal compounds and heavy elements

Users recommend ADF for its ability to provide the same stability for complex transition metal compounds as for simpler systems containing only light atoms. The relativistic methods and basis sets in ADF enable treatment of molecules with very heavy elements.

Modern xc energy functionals and potentials

A variety of the most accurate modern (meta-)GGA exchange-correlation (xc) energy functionals are all evaluated simultaneously in ADF. For reliable property calculations, improved xc potentials with correct asymptotic behavior, such as SAOP and GRAC, are available in ADF.

Efficiency, treatment of large molecules

One of the main complications that can arise in chemically relevant applications of DFT software is the treatment of large molecules. ADF has several qualities to enable treatment of such systems.

QM/MM

For truly large system sizes (more than a few hundred atoms), a mix of quantum mechanics and molecular mechanics (QM/MM) is often suitable if the major quantum effects are restricted to a certain part of the molecule ("active site"). QM/MM calculations can be performed on much larger systems than pure QM calculations, because the approximate MM calculations are very fast. Various standard force fields (Sybyl, Amber, UFF) are available.

Parallelization

Most parts of ADF have been efficiently parallelized for both shared-memory and distributed memory systems, such as simple Linux clusters. For most standard types of calculation, ADF approaches perfect linear scaling fairly well, even for a significant amount of CPUs.

Linear scaling / distance cut-offs

Because of the exponential spatial decay of the STO basis functions, ADF can easily exploit the fact that atoms that are far apart do not interact. This reduces the computational complexity from O(Natom 3) to O(Nat) for the most time-consuming parts of the calculation, leading to dramatic savings.

Density fit and frozen core approximation

A density fit procedure reduces the cost of the Coulomb potential evaluation. A frozen core approximation can be used to considerably reduce the computation time for systems with heavy nuclei, in a controlled manner.

BAND - The Periodic Structure BAND Program

  • BAND is a first-principles periodic structure program for the study of bulk crystals, polymers, as well as surfaces.
  • It performs electronic structure calculations based on Density Functional Theory.
  • It uses numerical and Slater atomic orbitals.
  • BAND avoids pseudo-potential approximations.
  • BAND is often used in heterogeneous catalysis studies.
  • BAND provides densities-of-states (total, partial, population) analyses.
  • It can provide the Potential Energy Surface (PES) of, for instance, a chemisorption system or a chemical reaction at a metal surface
  • BAND offers a variety of density functionals.
  • It enables both spin-restricted or spin-unrestricted calculations.
  • It provides an analysis of the "bonding" (cohesive) energy in conceptually useful components.
  • BAND calculates Mulliken-type population analyses and the charge density Fourier analysis (form factors).
  • A fragment analysis feature is available for decomposition of Density-of-States data in terms of the molecular orbitals of (molecular) fragments.
  • BAND uses the same relativistic methods (ZORA and spin-orbit) as ADF and is well suited to treat heavy nuclei.
  • A time-dependent DFT implementation will enable the accurate calculation of frequency-dependent dielectric functions (contact us for the current status).

The ADF Graphical User Interface

Key Features:

  • The input builder enable all users to set up very complicated calculations with a few mouse clicks.
  • A job controller to send input files to a remote machine for execution.
  • The output visualizer provides a graphical representation of many parts of the output, such as the computed Kohn-Sham orbitals, deformation densities and electrostatic potentials.
  • Rotate, zoom, and shift options for all three-dimensional plots.
  • Pictures can be saved for inclusion in other documents.
  • Support for standard graphical packages as well as popular input formats from widely-used molecular builders.

Supported Platforms

ADF is available on a wide variety of modern Unix and Linux platforms, including Pentium/Athlon with Linux, SGI, Compaq, and IBM. Macintosh OS X platform is also supported.

Hardware Requirements

The amount of memory and disk space required depends strongly on the size of the molecule and the type of application. For BAND the disk storage requirements tend to be considerably higher. The programs may run in as little as 32Mb memory for moderately sized systems. 128Mb is preferable. More than 512 Mb in case of very large calculations (per CPU).

Scientific Partner Credentials

SCM is a spin off from the Baerends group in Amsterdam. ADF has been developed in Amsterdam since the early seventies, with significant contributions from academic collaborators elsewhere. The two other main ADF development centers are the Ziegler group in Calgary and the theoretical chemistry group in Groningen.

 

 

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